Commit Graph

16 Commits

Author SHA1 Message Date
Augustin Zidek 47f1fe0c69 Clarify that this is code for AlphaFold 1 which we used in CASP13.
PiperOrigin-RevId: 359000764
2021-03-03 10:12:11 +00:00
Augustin Zidek e7cd4f32a3 Clarify how to open the dataset pickles under Python 3.
PiperOrigin-RevId: 350015548
2021-01-05 12:03:45 +00:00
Augustin Zidek 7ed0b0508d Clarify that AlphaFold works only under Linux.
PiperOrigin-RevId: 346101488
2020-12-07 17:05:06 +00:00
Augustin Zidek 77886cb179 Clarify that profile_with_prior is computed from HHBlits MSA.
PiperOrigin-RevId: 312276743
2020-05-19 15:42:55 +01:00
Augustin Zidek 6f14cb5983 Add more details about the output distogram format.
PiperOrigin-RevId: 310134498
2020-05-06 13:43:46 +01:00
Augustin Zidek 7bb484fffa Make it clear AlphaFold can't be used on arbitrary sequence.
PiperOrigin-RevId: 308052862
2020-04-23 16:09:06 +01:00
Augustin Zidek 25667f7d79 Fix the README: We are not using mutual_information in the model.
PiperOrigin-RevId: 305474614
2020-04-08 15:57:30 +01:00
Augustin Zidek 985ca4dce7 Fix documentation for the deletion_probability feature.
PiperOrigin-RevId: 298798686
2020-03-04 13:25:13 +00:00
Augustin Zidek 05dc76efa1 Add more details about AlphaFold features.
PiperOrigin-RevId: 292534089
2020-01-31 14:32:36 +00:00
Augustin Zidek d6385d6c13 Replace the Nature link with a direct link to the pdf.
PiperOrigin-RevId: 290043715
2020-01-16 13:00:28 +00:00
Augustin Zidek 2a954fa950 Change Bitly links to point to publicly accessible data.
PiperOrigin-RevId: 289864239
2020-01-15 18:23:28 +00:00
Augustin Zidek c8052237b8 Add paper link.
PiperOrigin-RevId: 289852567
2020-01-15 18:22:56 +00:00
Augustin Zidek 32abf74fd5 Remove wget from the README and clarify how to run the system.
PiperOrigin-RevId: 289630974
2020-01-15 18:22:33 +00:00
Augustin Zidek d8d6d1e75a Add more information on data access and remove dead argument.
PiperOrigin-RevId: 289429259
2020-01-15 18:22:17 +00:00
Augustin Zidek 3c6b08d3ca Add checkpoint and CASP13 dataset file sizes to the README and make the requirements more strict.
PiperOrigin-RevId: 289091312
2020-01-15 18:21:45 +00:00
Deepmind Team 8b47d2a576 Explicitly replace "import tensorflow" with "tensorflow.compat.v1"
PiperOrigin-RevId: 287568660
2020-01-15 18:20:33 +00:00