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dependabot/pip/adversarial_robustness/certifi-2023.7.22

dependabot/pip/adversarial_robustness/certifi-2024.7.4

dependabot/pip/adversarial_robustness/idna-3.7

dependabot/pip/adversarial_robustness/pillow-10.3.0

dependabot/pip/adversarial_robustness/protobuf-5.29.6

dependabot/pip/adversarial_robustness/scipy-1.11.1

dependabot/pip/adversarial_robustness/torch-2.7.0

dependabot/pip/adversarial_robustness/tqdm-4.66.3

dependabot/pip/adversarial_robustness/urllib3-2.6.3

dependabot/pip/adversarial_robustness/werkzeug-3.1.5

dependabot/pip/alphafold_casp13/setuptools-78.1.1

dependabot/pip/cs_gan/tensorflow-2.12.1

dependabot/pip/curl/scikit-learn-1.5.0

dependabot/pip/curl/tensorflow-2.12.1

dependabot/pip/density_functional_approximation_dm21/tensorflow-2.12.1

dependabot/pip/enformer/tensorflow-2.12.1

dependabot/pip/galaxy_mergers/astropy-5.3.3

dependabot/pip/galaxy_mergers/certifi-2023.7.22

dependabot/pip/galaxy_mergers/idna-3.7

dependabot/pip/galaxy_mergers/pillow-10.3.0

dependabot/pip/galaxy_mergers/protobuf-5.29.6

dependabot/pip/galaxy_mergers/scipy-1.11.1

dependabot/pip/galaxy_mergers/tensorflow-2.12.1

dependabot/pip/galaxy_mergers/urllib3-2.6.3

dependabot/pip/galaxy_mergers/werkzeug-3.1.5

dependabot/pip/gated_linear_networks/aiohttp-3.13.3

dependabot/pip/gated_linear_networks/certifi-2023.7.22

dependabot/pip/gated_linear_networks/idna-3.7

dependabot/pip/gated_linear_networks/protobuf-5.29.6

dependabot/pip/gated_linear_networks/scipy-1.11.1

dependabot/pip/gated_linear_networks/tensorflow-2.12.1

dependabot/pip/gated_linear_networks/tqdm-4.66.3

dependabot/pip/glassy_dynamics/future-1.0.0

dependabot/pip/glassy_dynamics/protobuf-5.29.6

dependabot/pip/glassy_dynamics/werkzeug-3.1.5

dependabot/pip/iodine/tensorflow-gpu-2.12.0

dependabot/pip/object_attention_for_reasoning/tensorflow-2.12.1

dependabot/pip/perceiver/pillow-10.3.0

dependabot/pip/perceiver/scipy-1.11.1

dependabot/pip/rl_unplugged/certifi-2023.7.22

dependabot/pip/rl_unplugged/idna-3.7

dependabot/pip/rl_unplugged/pillow-10.3.0

dependabot/pip/rl_unplugged/protobuf-5.29.6

dependabot/pip/rl_unplugged/scipy-1.11.1

dependabot/pip/rl_unplugged/urllib3-2.6.3

dependabot/pip/rl_unplugged/werkzeug-3.1.5

dependabot/pip/scratchgan/tensorflow-2.12.1

dependabot/pip/side_effects_penalties/certifi-2023.7.22

dependabot/pip/side_effects_penalties/cryptography-41.0.4

dependabot/pip/side_effects_penalties/idna-3.7

dependabot/pip/side_effects_penalties/paramiko-3.4.0

dependabot/pip/side_effects_penalties/pillow-10.3.0

dependabot/pip/sketchy/certifi-2023.7.22

dependabot/pip/sketchy/idna-3.7

dependabot/pip/sketchy/protobuf-5.29.6

dependabot/pip/sketchy/requests-2.32.4

dependabot/pip/sketchy/rsa-4.7

dependabot/pip/sketchy/tensorflow-2.12.1

dependabot/pip/sketchy/urllib3-1.26.17

dependabot/pip/sketchy/urllib3-2.6.3

dependabot/pip/tandem_dqn/idna-3.7

dependabot/pip/tandem_dqn/opencv-python-4.8.1.78

dependabot/pip/tandem_dqn/pillow-10.3.0

dependabot/pip/tandem_dqn/pyxdg-0.26

dependabot/pip/transporter/grpcio-1.53.2

dependabot/pip/transporter/protobuf-5.29.6

dependabot/pip/transporter/tensorflow-2.12.1

dependabot/pip/transporter/werkzeug-3.1.5

dependabot/pip/tvt/tensorflow-2.12.1

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6babbb4625 Bump protobuf from 3.7.1 to 5.29.6 in /transporter dependabot/pip/transporter/protobuf-5.29.6 dependabot[bot] 2026-02-05 17:44:45 +00:00
20f0c8dbc6 Bump protobuf from 3.17.3 to 5.29.6 in /adversarial_robustness dependabot/pip/adversarial_robustness/protobuf-5.29.6 dependabot[bot] 2026-02-05 16:21:01 +00:00
6ff91ef26a Bump protobuf from 3.15.3 to 5.29.6 in /galaxy_mergers dependabot/pip/galaxy_mergers/protobuf-5.29.6 dependabot[bot] 2026-02-05 16:12:30 +00:00
9239585995 Bump protobuf from 3.13.0 to 5.29.6 in /gated_linear_networks dependabot/pip/gated_linear_networks/protobuf-5.29.6 dependabot[bot] 2026-02-05 16:08:06 +00:00
de0f89fd37 Bump protobuf from 3.12.2 to 5.29.6 in /rl_unplugged dependabot/pip/rl_unplugged/protobuf-5.29.6 dependabot[bot] 2026-02-05 16:02:26 +00:00
d1b0d3b846 Bump protobuf from 3.11.2 to 5.29.6 in /sketchy dependabot/pip/sketchy/protobuf-5.29.6 dependabot[bot] 2026-02-05 15:56:12 +00:00
78adb89841 Bump protobuf from 3.10.0 to 5.29.6 in /glassy_dynamics dependabot/pip/glassy_dynamics/protobuf-5.29.6 dependabot[bot] 2026-02-05 15:53:55 +00:00
17fe80fcc6 Bump werkzeug from 2.0.1 to 3.1.5 in /adversarial_robustness dependabot/pip/adversarial_robustness/werkzeug-3.1.5 dependabot[bot] 2026-01-08 21:01:52 +00:00
529679c932 Bump werkzeug from 1.0.1 to 3.1.5 in /galaxy_mergers dependabot/pip/galaxy_mergers/werkzeug-3.1.5 dependabot[bot] 2026-01-08 20:49:04 +00:00
2eb5ba7f09 Bump werkzeug from 1.0.1 to 3.1.5 in /rl_unplugged dependabot/pip/rl_unplugged/werkzeug-3.1.5 dependabot[bot] 2026-01-08 20:39:25 +00:00
b5bee73b6e Bump werkzeug from 0.16.0 to 3.1.5 in /glassy_dynamics dependabot/pip/glassy_dynamics/werkzeug-3.1.5 dependabot[bot] 2026-01-08 20:22:50 +00:00
70b6fe43cc Bump werkzeug from 0.15.4 to 3.1.5 in /transporter dependabot/pip/transporter/werkzeug-3.1.5 dependabot[bot] 2026-01-08 20:12:29 +00:00
9edf1d5c33 Bump urllib3 from 1.26.6 to 2.6.3 in /adversarial_robustness dependabot/pip/adversarial_robustness/urllib3-2.6.3 dependabot[bot] 2026-01-08 00:13:10 +00:00
eeb220fdd3 Bump urllib3 from 1.26.3 to 2.6.3 in /galaxy_mergers dependabot/pip/galaxy_mergers/urllib3-2.6.3 dependabot[bot] 2026-01-07 23:46:31 +00:00
88635fe875 Bump urllib3 from 1.25.9 to 2.6.3 in /rl_unplugged dependabot/pip/rl_unplugged/urllib3-2.6.3 dependabot[bot] 2026-01-07 20:38:54 +00:00
2242433cf6 Bump urllib3 from 1.25.7 to 2.6.3 in /sketchy dependabot/pip/sketchy/urllib3-2.6.3 dependabot[bot] 2026-01-07 20:18:57 +00:00
e4a092098d Bump aiohttp from 3.6.2 to 3.13.3 in /gated_linear_networks dependabot/pip/gated_linear_networks/aiohttp-3.13.3 dependabot[bot] 2026-01-06 01:41:47 +00:00
3d0ff3f8a0 Bump future from 0.18.0 to 1.0.0 in /glassy_dynamics dependabot/pip/glassy_dynamics/future-1.0.0 dependabot[bot] 2025-08-22 23:25:47 +00:00
3efd6e1912 Bump requests from 2.22.0 to 2.32.4 in /sketchy dependabot/pip/sketchy/requests-2.32.4 dependabot[bot] 2025-06-09 20:51:42 +00:00
a2e0dbd825 Bump torch from 1.9.0 to 2.7.0 in /adversarial_robustness dependabot/pip/adversarial_robustness/torch-2.7.0 dependabot[bot] 2025-05-30 18:45:40 +00:00
9247c8fc31 Bump setuptools from 41.0.0 to 78.1.1 in /alphafold_casp13 dependabot/pip/alphafold_casp13/setuptools-78.1.1 dependabot[bot] 2025-05-19 19:13:24 +00:00
2cd315aa02 Bump rsa from 4.0 to 4.7 in /sketchy dependabot/pip/sketchy/rsa-4.7 dependabot[bot] 2024-10-26 22:39:52 +00:00
2246bf244b Bump opencv-python from 4.2.0.34 to 4.8.1.78 in /tandem_dqn dependabot/pip/tandem_dqn/opencv-python-4.8.1.78 dependabot[bot] 2024-08-30 23:52:15 +00:00
af18792e6e Bump tensorflow from 2.5.0 to 2.12.1 in /enformer dependabot/pip/enformer/tensorflow-2.12.1 dependabot[bot] 2024-07-30 21:33:25 +00:00
6027e94e4e Bump tensorflow from 2.4.1 to 2.12.1 in /galaxy_mergers dependabot/pip/galaxy_mergers/tensorflow-2.12.1 dependabot[bot] 2024-07-30 21:31:12 +00:00
847190542f Bump tensorflow from 2.3.1 to 2.12.1 in /gated_linear_networks dependabot/pip/gated_linear_networks/tensorflow-2.12.1 dependabot[bot] 2024-07-30 21:27:13 +00:00
a272e26f9c Bump tensorflow in /density_functional_approximation_dm21 dependabot/pip/density_functional_approximation_dm21/tensorflow-2.12.1 dependabot[bot] 2024-07-30 21:14:23 +00:00
2db451d141 Bump tensorflow from 2.0.0 to 2.12.1 in /sketchy dependabot/pip/sketchy/tensorflow-2.12.1 dependabot[bot] 2024-07-30 21:07:18 +00:00
e75da307e9 Bump tensorflow from 1.15rc2 to 2.12.1 in /cs_gan dependabot/pip/cs_gan/tensorflow-2.12.1 dependabot[bot] 2024-07-30 21:02:41 +00:00
1ae8dcf69c Bump tensorflow from 1.15.0 to 2.12.1 in /object_attention_for_reasoning dependabot/pip/object_attention_for_reasoning/tensorflow-2.12.1 dependabot[bot] 2024-07-30 21:00:30 +00:00
9ace60ecdb Bump tensorflow from 1.15 to 2.12.1 in /scratchgan dependabot/pip/scratchgan/tensorflow-2.12.1 dependabot[bot] 2024-07-30 20:59:26 +00:00
2d50c70f5a Bump tensorflow from 1.14.0 to 2.12.1 in /curl dependabot/pip/curl/tensorflow-2.12.1 dependabot[bot] 2024-07-30 20:56:56 +00:00
2d8caafb4a Bump tensorflow from 1.13.2 to 2.12.1 in /tvt dependabot/pip/tvt/tensorflow-2.12.1 dependabot[bot] 2024-07-30 20:56:04 +00:00
b603d223ef Bump tensorflow from 1.13.1 to 2.12.1 in /transporter dependabot/pip/transporter/tensorflow-2.12.1 dependabot[bot] 2024-07-30 20:54:36 +00:00
4237e38514 Bump tensorflow-gpu from 1.14.0 to 2.12.0 in /iodine dependabot/pip/iodine/tensorflow-gpu-2.12.0 dependabot[bot] 2024-07-30 20:49:39 +00:00
4c2f94bc60 Bump grpcio from 1.20.1 to 1.53.2 in /transporter dependabot/pip/transporter/grpcio-1.53.2 dependabot[bot] 2024-07-30 10:32:34 +00:00
29fedcfbb6 Bump certifi from 2021.5.30 to 2024.7.4 in /adversarial_robustness dependabot/pip/adversarial_robustness/certifi-2024.7.4 dependabot[bot] 2024-07-05 21:28:14 +00:00
a248f9c0fb Bump scikit-learn from 0.20.4 to 1.5.0 in /curl dependabot/pip/curl/scikit-learn-1.5.0 dependabot[bot] 2024-06-17 22:59:58 +00:00
ae2c811100 Bump tqdm from 4.61.1 to 4.66.3 in /adversarial_robustness dependabot/pip/adversarial_robustness/tqdm-4.66.3 dependabot[bot] 2024-05-03 20:20:26 +00:00
14414fef45 Bump tqdm from 4.50.0 to 4.66.3 in /gated_linear_networks dependabot/pip/gated_linear_networks/tqdm-4.66.3 dependabot[bot] 2024-05-03 20:04:59 +00:00
83c2846ffa Bump scipy from 1.7.0 to 1.11.1 in /adversarial_robustness dependabot/pip/adversarial_robustness/scipy-1.11.1 dependabot[bot] 2024-04-22 20:42:45 +00:00
11432cf2db Bump scipy from 1.7.0 to 1.11.1 in /perceiver dependabot/pip/perceiver/scipy-1.11.1 dependabot[bot] 2024-04-22 20:42:17 +00:00
ebea45f920 Bump scipy from 1.6.1 to 1.11.1 in /galaxy_mergers dependabot/pip/galaxy_mergers/scipy-1.11.1 dependabot[bot] 2024-04-22 20:30:35 +00:00
30598649af Bump scipy from 1.5.2 to 1.11.1 in /gated_linear_networks dependabot/pip/gated_linear_networks/scipy-1.11.1 dependabot[bot] 2024-04-22 20:11:39 +00:00
aa4a11e6c4 Bump scipy from 1.4.1 to 1.11.1 in /rl_unplugged dependabot/pip/rl_unplugged/scipy-1.11.1 dependabot[bot] 2024-04-22 19:49:02 +00:00
cb8453431e Bump idna from 2.9 to 3.7 in /side_effects_penalties dependabot/pip/side_effects_penalties/idna-3.7 dependabot[bot] 2024-04-11 23:41:35 +00:00
7ca6d0feda Bump idna from 2.8 to 3.7 in /sketchy dependabot/pip/sketchy/idna-3.7 dependabot[bot] 2024-04-11 23:21:04 +00:00
6d7973f605 Bump idna from 2.6 to 3.7 in /tandem_dqn dependabot/pip/tandem_dqn/idna-3.7 dependabot[bot] 2024-04-11 22:54:52 +00:00
5d57acff04 Bump idna from 2.10 to 3.7 in /galaxy_mergers dependabot/pip/galaxy_mergers/idna-3.7 dependabot[bot] 2024-04-11 22:30:35 +00:00
d8b1e18e8d Bump idna from 2.10 to 3.7 in /gated_linear_networks dependabot/pip/gated_linear_networks/idna-3.7 dependabot[bot] 2024-04-11 22:30:34 +00:00
1d5ae8326d Bump idna from 2.10 to 3.7 in /adversarial_robustness dependabot/pip/adversarial_robustness/idna-3.7 dependabot[bot] 2024-04-11 22:30:33 +00:00
231e3c1fa5 Bump idna from 2.10 to 3.7 in /rl_unplugged dependabot/pip/rl_unplugged/idna-3.7 dependabot[bot] 2024-04-11 21:37:43 +00:00
a8631a142f Bump pillow from 8.3.1 to 10.3.0 in /perceiver dependabot/pip/perceiver/pillow-10.3.0 dependabot[bot] 2024-04-03 18:57:58 +00:00
02f789b611 Bump pillow from 8.2.0 to 10.3.0 in /adversarial_robustness dependabot/pip/adversarial_robustness/pillow-10.3.0 dependabot[bot] 2024-04-03 18:48:46 +00:00
239be89446 Bump pillow from 8.1.0 to 10.3.0 in /galaxy_mergers dependabot/pip/galaxy_mergers/pillow-10.3.0 dependabot[bot] 2024-04-03 18:24:57 +00:00
626a958112 Bump pillow from 7.2.0 to 10.3.0 in /rl_unplugged dependabot/pip/rl_unplugged/pillow-10.3.0 dependabot[bot] 2024-04-03 17:53:24 +00:00
2cda9cd8c7 Bump pillow from 7.1.2 to 10.3.0 in /tandem_dqn dependabot/pip/tandem_dqn/pillow-10.3.0 dependabot[bot] 2024-04-03 17:53:01 +00:00
ad5752e0e9 Bump pillow from 7.2.0 to 10.3.0 in /side_effects_penalties dependabot/pip/side_effects_penalties/pillow-10.3.0 dependabot[bot] 2024-04-03 17:52:27 +00:00
f5508bd8eb Bump astropy from 4.2 to 5.3.3 in /galaxy_mergers dependabot/pip/galaxy_mergers/astropy-5.3.3 dependabot[bot] 2024-03-18 20:32:59 +00:00
55ccd473f0 Bump paramiko from 2.6.0 to 3.4.0 in /side_effects_penalties dependabot/pip/side_effects_penalties/paramiko-3.4.0 dependabot[bot] 2023-12-19 20:57:12 +00:00
7e874d924c Bump urllib3 from 1.25.7 to 1.26.17 in /sketchy dependabot/pip/sketchy/urllib3-1.26.17 dependabot[bot] 2023-10-03 00:59:29 +00:00
cc395cd8c8 Bump cryptography from 2.8 to 41.0.4 in /side_effects_penalties dependabot/pip/side_effects_penalties/cryptography-41.0.4 dependabot[bot] 2023-09-21 17:21:23 +00:00
a704baa26f Bump certifi from 2021.5.30 to 2023.7.22 in /adversarial_robustness dependabot/pip/adversarial_robustness/certifi-2023.7.22 dependabot[bot] 2023-08-17 01:03:22 +00:00
2d450a5f69 Bump certifi from 2020.6.20 to 2023.7.22 in /gated_linear_networks dependabot/pip/gated_linear_networks/certifi-2023.7.22 dependabot[bot] 2023-08-16 23:11:13 +00:00
735e4df8f7 Bump pyxdg from 0.25 to 0.26 in /tandem_dqn dependabot/pip/tandem_dqn/pyxdg-0.26 dependabot[bot] 2023-08-16 22:52:24 +00:00
59e4dd5d34 Bump certifi from 2020.6.20 to 2023.7.22 in /rl_unplugged dependabot/pip/rl_unplugged/certifi-2023.7.22 dependabot[bot] 2023-08-16 22:39:56 +00:00
85fb005ad5 Bump certifi from 2020.4.5.1 to 2023.7.22 in /side_effects_penalties dependabot/pip/side_effects_penalties/certifi-2023.7.22 dependabot[bot] 2023-08-16 22:19:17 +00:00
86c9bef4a0 Bump certifi from 2020.12.5 to 2023.7.22 in /galaxy_mergers dependabot/pip/galaxy_mergers/certifi-2023.7.22 dependabot[bot] 2023-08-16 22:16:37 +00:00
fdfe1bf70b Bump certifi from 2019.11.28 to 2023.7.22 in /sketchy dependabot/pip/sketchy/certifi-2023.7.22 dependabot[bot] 2023-08-16 20:34:31 +00:00
f5de0ede84 Add code for generating s3o4d data master David Pfau 2023-05-26 12:49:41 +01:00
9176a9f23c Silence some pytype errors. Rebecca Chen 2023-04-28 18:53:17 +01:00
fb1d757863 pytype fix Alvaro Sanchez-Gonzalez 2023-04-19 14:37:09 +01:00
f905943c13 Remove references to deprecated jax.ShapedArray Jake VanderPlas 2023-03-31 07:59:53 +01:00
9d01171d43 Replace references to deprecated jax.curry function. Jake VanderPlas 2023-03-29 10:03:36 +01:00
82a347438f Fix pytype failures related to teaching pytype about NumPy scalar types. Peter Hawkins 2023-03-24 19:06:40 +00:00
e2d21540e8 Internal change John Cater 2023-03-20 12:02:42 +00:00
d988ff1bf2 Replaces references to jax.numpy.DeviceArray with jax.Array. Peter Hawkins 2023-03-10 18:42:12 +00:00
0824c28deb Silence some pytype errors. Rebecca Chen 2023-03-10 10:30:19 +00:00
784f67565e Suppress some pytype errors related to jnp.DeviceArray == jax.Array. Peter Hawkins 2023-03-08 10:57:57 +00:00
6f0ddef7da Fix or ignore some pytype errors related to jnp.ndarray == jax.Array. Peter Hawkins 2023-02-26 01:47:16 +00:00
c051e6a51d Fix or ignore some pytype errors related to jnp.ndarray == jax.Array. Peter Hawkins 2023-02-21 21:45:32 +00:00
797ea3c71d [JAX] Remove obsolete unit type declarations in jax.core. Remove obsolete unit test in host_callback. Peter Hawkins 2023-02-06 15:25:23 +00:00
cb555c241b Update DM21 pinned requirements and bazel config for compiling functional to C++. James Spencer 2023-01-27 20:05:30 +00:00
c7e2ef28be [NumPy] Remove references to deprecated NumPy type aliases. Peter Hawkins 2023-01-13 13:41:21 +00:00
3c1aa70723 Silence some pytype errors. Rebecca Chen 2022-12-20 22:04:27 +00:00
4caaad8b0a [NumPy] Remove references to deprecated NumPy type aliases. Peter Hawkins 2022-12-16 13:39:44 +00:00
ea772958de Silence some pytype errors. Rebecca Chen 2022-11-28 11:31:34 +00:00
e1e065d63e Update bazel configuration and dependencies for DM21 James Spencer 2022-10-26 11:49:48 +00:00
a318c69018 Fixing bug in open source implementation of OGB-LSC/PCQ. Alvaro Sanchez-Gonzalez 2022-10-24 09:29:40 +00:00
a748a7c817 Set small_rho_cutoff in DM21 tests to match pyscf 2.0 behaviour. James Spencer 2022-10-11 10:16:42 +00:00
a8dab395c8 Lift restriction on h5py now pyscf 2 is widely available. James Spencer 2022-10-11 10:15:00 +00:00
affa162ac7 Return exc, vxc as float64 arrays. James Spencer 2022-10-11 10:13:38 +00:00
789bc38a2e Add unused omega argument to NeuralNumint.eval_xc to match pyscf interface James Spencer 2022-10-11 10:11:56 +00:00
da0f2de14d Replace jnp.DeviceArray with the new public type jax.Array. Yash Katariya 2022-09-28 21:53:07 +00:00
58fb45db7e Make this code compatible with Python 3.10. Yilei Yang 2022-09-12 09:56:26 +00:00
3af71dd9a7 Make this code compatible with Python 3.10. Yilei Yang 2022-09-10 13:13:36 +00:00
586a1c55de fix side effects baseline test flakiness due to corner case Victoria Krakovna 2022-07-26 20:51:08 +00:00
6fcb84268e Use jax.tree_util.tree_map in place of deprecated tree_multimap. Jake VanderPlas 2022-07-15 21:14:58 +01:00
956c4b5d9c Use jax.tree_util.tree_map in place of deprecated tree_multimap. Jake VanderPlas 2022-07-14 22:03:46 +01:00
11c2ab53e8 Update enformer-training.ipynb to show how to restore from checkpoint. Kyle Taylor 2022-05-25 12:37:13 +01:00

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