Updates the README file by adding a link to the journal version of our paper and adds missing information for the citation.

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Peter Wirnsberger
2020-10-21 16:58:43 +01:00
committed by Saran Tunyasuvunakool
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# Algorithms for Causal Reasoning in Probability Trees
*By the AGI Safety Analysis Team @ DeepMind*
Probability trees are one of the simplest models of causal generative processes.
They possess clean semantics and are strictly more general than causal Bayesian
networks, as they are able to e.g. represent causal relations that causal Bayesian
networks cannot. Yet, they have received little attention from the AI and ML
community. Here we present new algorithms for causal reasoning in discrete
probability trees that cover the entire causal hierarchy (association, intervention,
and counterfactuals), and operate on arbitrary propositional and causal events. Our
work expands the domain of causal reasoning to a very general class of discrete
stochastic processes.
For details, see our paper [Algorithms for Causal Reasoning in Probability Trees]().
To launch the accompanying notebook in Google colab, [click here](https://colab.research.google.com/github/deepmind/deepmind_research/blob/master/causal_reasoning/Causal_Reasoning_in_Probability_Trees.ipynb).
If you use the code here please cite this paper.
> Tim Genewein*, Tom McGrath*, Grégoire Delétang*, Vladimir Mikulik*, Miljan Martic, Shane Legg, Pedro A. Ortega. NeurIPS 2020. [\[arXiv\]]()

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# Targeted free energy estimation via learned mappings
This repository contains supporting data for our publication
([arXiv](https://arxiv.org/abs/2002.04913)). Here, we provide
([journal](https://doi.org/10.1063/5.0018903), [arXiv](https://arxiv.org/abs/2002.04913)).
Here, we provide
- molecular dynamics (MD) datasets underlying the results reported in our paper,
- a LAMMPS input script to generate these datasets, and
- the data plotted in Fig. 5 of our paper to facilitate comparison.
@@ -96,9 +97,11 @@ If you find this repository helpful for your research, please cite our publicati
title={Targeted free energy estimation via learned mappings},
author={Wirnsberger, Peter and Ballard, Andrew J and Papamakarios, George and
Abercrombie, Stuart and Racanière, Sébastien and Pritzel, Alexander and
Jimenez Rezende, Danilo and Blundell, Charles}
journal={Journal of Chemical Physics},
vol={153},
Jimenez Rezende, Danilo and Blundell, Charles},
journal={J. Chem. Phys.},
volume={153},
number={14},
pages={144112},
year={2020},
doi={10.1063/5.0018903}
}