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Debugging with Eclipse and J-Link
This topic explains how to setup and use MCU Eclipse with a Segger Jlink adapter to debug PX4 running on NuttX (e.g. Pixhawk series boards).
Required Hardware
- J-Link EDU Mini
- Adapter to connect Segger JLink to Flight Controller SWD Debug Port (debug port).
- Micro USB cable
Installation
PX4
Setup PX4 by following the normal guidelines:
- Setup the PX4 Developer Environment/Toolchain for your platform (e.g. for Linux see: Development Environment on Ubuntu LTS / Debian Linux).
- Download PX4 and optionally build it on the command line.
Eclipse
To install Eclipse:
- Download Eclipse CDT for C/C++ Developers (MCU GitHub).
- Extract the Eclipse folder and copy it anywhere (there is no need to run any install scripts).
- Run Eclipse and choose a location for your initial workbench.
Segger Jlink Tools
To install the Segger Jlink tools:
- Download and run the J-Link Software and Documentation Pack for your OS (Windows and Linux packages available).
- On Linux the tools are installed in /usr/bin.
For more information, see: https://gnu-mcu-eclipse.github.io/debug/jlink/install/.
First Use
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Connect the Segger JLink to the host computer and the flight controller debug port (via an adapter).
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Power the flight controller.
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Run Eclipse.
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Add a source by choosing File > Import > C/C++ > Existing Code as Makefile Project and click Next.
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Point it to the PX4-Autopilot folder and give it a name, then select ARM Cross GCC in the Toolchain for Indexer Settings and click Finish. Import takes a while, wait for it to complete.
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Set the MCU settings: right-click on the top-level project in the Project Explorer, select Properties then under MCU choose SEGGER J-Link Path. Set it as shown in the screenshot below.

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Update packs:
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Click the small icon on the top right called Open Perspective and open the Packs perspective.

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Click the update all button.
:::tip This takes a VERY LONG TIME (10 minutes). Ignore all the errors about missing packages that pop up. :::
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The STM32Fxx devices are found in the Keil folder, install by right-clicking and then selecting install on the according device for F4 and F7.
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Setup debug configuration for target:
- Right click project and open the Settings (menu: C/C++ Build > Settings)
- Choose the Devices Tab, Devices section (Not Boards).
- Find the FMU chip you wish to debug.
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Select debug configurations with the small drop-down next to the bug symbol:

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Then select GDB SEGGER J-Link Debugging and then the New config button on the top left.

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Setup build config:
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Give it a name and set the C/C++ Application to the corresponding .elf file.
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Choose Disable Auto build
::: info Remember that you must build the target from the command line before starting a debug session. :::
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The Debugger and Startup tabs shouldn’t need any modifications (just verify your settings with the screenshots below)
SEGGER Task-aware debugging
Task-aware debugging (also known as thread-aware debugging) allows you to show the context of all running threads/tasks instead of just the stack current task. This is quite useful since PX4 tends to run many different tasks.
To enable this feature for use in Eclipse:
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You first need to enable
CONFIG_DEBUG_TCBINFOin the NuttX configuration for your build (to expose the TCB offsets).-
Open a terminal in the root of your PX4-Autopilot source code
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In the terminal, open
menuconfigusing the appropriate make target for the build. This will be something like:make px4_fmu-v5_default boardguiconfig(See PX4 Menuconfig Setup for more information) on using the config tools).
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Ensure that the Enable TCBinfo struct for debug is selected as shown:

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Compile the jlink-nuttx.so library in the terminal by running the following command in the terminal:
make jlink-nuttx -
Modify Eclipse to use this libary. In the J-Link GDB Server Setup configuration, update Other options to include
-rtos /home/<PX4 path>/Tools/jlink-nuttx.so, as shown in the image below. -
When running the debugger you should see now multiple threads instead of just one:
Troubleshooting
Target CPU not in Package Manager
If the target CPU does not appear in the package manager you may need these steps to get the register view working.
:::tip This should not generally happen (but anecdotally has been reported when connecting to an STM F7 controller). :::
Adding missing SVD files for the Peripheral View:
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Find out where MCU Eclipse stores its packages (Preferences > C/C++ > MCU Packages):
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Download missing packages from: https://www.keil.arm.com/devices/
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Open downloaded pack with a decompression tool, and extract the .SVD files from: /CMSIS/SVD.
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Select desired .SVD file in: Debug Options > GDB SEGGER JLink Debugging > SVD Path








