diff --git a/sw/tools/gen_flight_plan.ml b/sw/tools/gen_flight_plan.ml
index 003c10fdf1..8cee6ff50b 100644
--- a/sw/tools/gen_flight_plan.ml
+++ b/sw/tools/gen_flight_plan.ml
@@ -724,7 +724,7 @@ let () =
       printf "\n";
 
       printf "#include \"std.h\"\n";
-      printf "#include \"modules.h\"\n";
+      printf "#include \"generated/modules.h\"\n";
 
       begin
     try
diff --git a/sw/tools/gen_modules.ml b/sw/tools/gen_modules.ml
index 8c41ea50d9..8c203f018c 100644
--- a/sw/tools/gen_modules.ml
+++ b/sw/tools/gen_modules.ml
@@ -229,7 +229,7 @@ let print_event_functions = fun modules ->
 
 let print_datalink_functions = fun modules ->
   lprintf out_h "\n#include \"messages.h\"\n";
-  lprintf out_h "#include \"airframe.h\"\n";
+  lprintf out_h "#include \"generated/airframe.h\"\n";
   lprintf out_h "static inline void modules_parse_datalink(uint8_t msg_id __attribute__ ((unused))) {\n";
   right ();
   let else_ = ref "" in
diff --git a/sw/tools/gen_settings.ml b/sw/tools/gen_settings.ml
index 35a31412fa..7bc25f6424 100644
--- a/sw/tools/gen_settings.ml
+++ b/sw/tools/gen_settings.ml
@@ -66,7 +66,7 @@ let print_dl_settings = fun settings ->
 
   lprintf "\n";
   StringSet.iter (fun m -> lprintf "#include \"%s.h\"\n" m) !modules;
-  lprintf "#include \"modules.h\"\n";
+  lprintf "#include \"generated/modules.h\"\n";
   lprintf "\n";
 
   (** Macro to call to set one variable *)