diff --git a/alphafold_casp13/README.md b/alphafold_casp13/README.md index 7ea411c..191626e 100644 --- a/alphafold_casp13/README.md +++ b/alphafold_casp13/README.md @@ -30,9 +30,26 @@ forked `deepmind_research` repository using: ```shell python3 -m venv alphafold_venv source alphafold_venv/bin/activate +pip install wheel pip install -r alphafold_casp13/requirements.txt ``` +## Data + +While the code is licensed under the Apache License, the AlphaFold weights and +data are made available for non-commercial use only under the terms of the +Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) +license. You can find details at: +https://creativecommons.org/licenses/by-nc/4.0/legalcode + +In order to download the AlphaFold weights and data, you will need to request +access using the +[request form](https://docs.google.com/forms/d/1yrZXhQfSlwYnouDujrL2RkZKVBjF5AjomyF_RJ95dew/). + +Once you have obtained access, you can download the data from +[Google Cloud Storage](https://console.cloud.google.com/storage/browser/alphafold_casp13_data). + + ### Input data The dataset to reproduce AlphaFold's CASP13 results can be downloaded from diff --git a/alphafold_casp13/contacts_network.py b/alphafold_casp13/contacts_network.py index 6cb00c3..c911df3 100644 --- a/alphafold_casp13/contacts_network.py +++ b/alphafold_casp13/contacts_network.py @@ -55,7 +55,6 @@ class ContactsNet(sonnet.AbstractModule): resolution_noise_scale, scalars, targets, - network_2d, network_2d_deep, torsion_bins=None, skip_connect=0, @@ -88,7 +87,6 @@ class ContactsNet(sonnet.AbstractModule): self._torsion_bins = torsion_bins self._skip_connect = skip_connect self._targets = targets - self._network_2d = network_2d self._network_2d_deep = network_2d_deep self.asa_multiplier = asa_multiplier