diff --git a/alphafold_casp13/README.md b/alphafold_casp13/README.md index 462d788..7ea411c 100644 --- a/alphafold_casp13/README.md +++ b/alphafold_casp13/README.md @@ -15,10 +15,11 @@ Pushmeet Kohli, David T. Jones, David Silver, Koray Kavukcuoglu, Demis Hassabis. ### Dependencies * Python 3.6+. -* [Abseil 0.8.0+](https://github.com/abseil/abseil-py) -* [Numpy 1.16+](https://numpy.org) -* [Six 1.12+](https://pypi.org/project/six/) -* [Sonnet 1.35+](https://github.com/deepmind/sonnet) +* [Abseil 0.8.0](https://github.com/abseil/abseil-py) +* [Numpy 1.16](https://numpy.org) +* [Six 1.12](https://pypi.org/project/six/) +* [Setuptools 41.0.0](https://setuptools.readthedocs.io/en/latest/) +* [Sonnet 1.35](https://github.com/deepmind/sonnet) * [TensorFlow 1.14](https://tensorflow.org). Not compatible with TensorFlow 2.0+. * [TensorFlow Probability 0.7.0](https://www.tensorflow.org/probability) @@ -34,10 +35,10 @@ pip install -r alphafold_casp13/requirements.txt ### Input data -The dataset can be downloaded from +The dataset to reproduce AlphaFold's CASP13 results can be downloaded from [Google Cloud Storage](https://console.cloud.google.com/storage/browser/alphafold_casp13_data). -Download it e.g. using `wget`: +Download it e.g. using `wget` (the file is about 43.5 GB): ```shell wget https://storage.googleapis.com/alphafold_casp13_data/casp13_data.zip @@ -69,7 +70,7 @@ targets to get the contact map. The model checkpoints can be downloaded from [Google Cloud Storage](https://console.cloud.google.com/storage/browser/alphafold_casp13_data). -Download them e.g. using `wget`: +Download them e.g. using `wget` (the file is about 210 MB): ```shell wget https://storage.googleapis.com/alphafold_casp13_data/alphafold_casp13_weights.zip