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Remove wget from the README and clarify how to run the system.

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PiperOrigin-RevId: 289630974
This commit is contained in:
Augustin Zidek
2020-01-14 13:16:33 +00:00
committed by Diego de Las Casas
parent d8d6d1e75a
commit 32abf74fd5
2 changed files with 8 additions and 12 deletions
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alphafold_casp13/README.md
+7 -12
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@@ -34,6 +34,10 @@ pip install wheel
pip install -r alphafold_casp13/requirements.txt
```
Alternatively, you can just use the `run_eval.sh` script provided which runs
these commands for you, see the section on running the system below for more
details.
## Data
While the code is licensed under the Apache License, the AlphaFold weights and
@@ -54,12 +58,7 @@ Once you have obtained access, you can download the data from
The dataset to reproduce AlphaFold's CASP13 results can be downloaded from
[Google Cloud Storage](https://console.cloud.google.com/storage/browser/alphafold_casp13_data).
Download it e.g. using `wget` (the file is about 43.5 GB):
```shell
wget https://storage.googleapis.com/alphafold_casp13_data/casp13_data.zip
```
The dataset is in a file called `casp13_data.zip` which has about **43.5 GB**.
The zip file contains 1 directory for each CASP13 target and a `LICENSE.md`
file. Each target directory contains the following files:
@@ -86,12 +85,8 @@ targets to get the contact map.
The model checkpoints can be downloaded from
[Google Cloud Storage](https://console.cloud.google.com/storage/browser/alphafold_casp13_data).
Download them e.g. using `wget` (the file is about 210 MB):
```shell
wget https://storage.googleapis.com/alphafold_casp13_data/alphafold_casp13_weights.zip
```
The model checkpoints are in a file called `alphafold_casp13_weights.zip` which
has about **210 MB**.
The zip file contains: